ChemCoord
v2.0.4
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ChemCoord
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Index
_
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A
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B
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C
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D
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F
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G
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H
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I
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L
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M
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P
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R
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S
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T
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U
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V
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W
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Z
_
__init__() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
_divide_et_impera() (chemcoord.Cartesian method)
_preserve_bonds() (chemcoord.Cartesian method)
A
add_data() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
align() (chemcoord.Cartesian method)
allclose() (in module chemcoord.xyz_functions)
append() (chemcoord.Cartesian method)
apply_grad_cartesian_tensor() (in module chemcoord.zmat_functions)
apply_grad_zmat_tensor() (in module chemcoord.xyz_functions)
AsymmetricUnitCartesian (class in chemcoord)
B
basistransform() (chemcoord.Cartesian method)
C
Cartesian (class in chemcoord)
change_numbering() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
check_absolute_refs() (chemcoord.Cartesian method)
check_dihedral() (chemcoord.Cartesian method)
columns (chemcoord.Cartesian attribute)
(chemcoord.Zmat attribute)
concat() (in module chemcoord.xyz_functions)
copy() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
correct_absolute_refs() (chemcoord.Cartesian method)
correct_dihedral() (chemcoord.Cartesian method)
cut_cuboid() (chemcoord.Cartesian method)
cut_sphere() (chemcoord.Cartesian method)
D
dot() (in module chemcoord.xyz_functions)
dtypes (chemcoord.Zmat attribute)
DummyManipulation (class in chemcoord.zmat_functions)
F
fragmentate() (chemcoord.Cartesian method)
from_ase_atoms() (chemcoord.Cartesian class method)
from_pymatgen_molecule() (chemcoord.Cartesian class method)
G
get_angle_degrees() (chemcoord.Cartesian method)
get_ase_atoms() (chemcoord.Cartesian method)
get_asymmetric_unit() (chemcoord.Cartesian method)
get_barycenter() (chemcoord.Cartesian method)
get_bond_lengths() (chemcoord.Cartesian method)
get_bonds() (chemcoord.Cartesian method)
get_cartesian() (chemcoord.AsymmetricUnitCartesian method)
(chemcoord.Zmat method)
get_centroid() (chemcoord.Cartesian method)
get_construction_table() (chemcoord.Cartesian method)
get_coordination_sphere() (chemcoord.Cartesian method)
get_dihedral_degrees() (chemcoord.Cartesian method)
get_distance_to() (chemcoord.Cartesian method)
get_electron_number() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
get_equivalent_atoms() (chemcoord.Cartesian method)
get_fragment() (chemcoord.Cartesian method)
get_grad_cartesian() (chemcoord.Zmat method)
get_grad_zmat() (chemcoord.Cartesian method)
get_inertia() (chemcoord.Cartesian method)
get_pointgroup() (chemcoord.Cartesian method)
get_pymatgen_molecule() (chemcoord.Cartesian method)
get_shortest_distance() (chemcoord.Cartesian method)
get_total_mass() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
get_without() (chemcoord.Cartesian method)
get_zmat() (chemcoord.Cartesian method)
H
has_same_sumformula() (chemcoord.Zmat method)
I
IllegalArgumentCombination
iloc (chemcoord.Cartesian attribute)
(chemcoord.Zmat attribute)
index (chemcoord.Cartesian attribute)
(chemcoord.Zmat attribute)
insert() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
InvalidReference
isclose() (in module chemcoord.xyz_functions)
iupacify() (chemcoord.Zmat method)
L
loc (chemcoord.Cartesian attribute)
(chemcoord.Zmat attribute)
M
minimize_dihedrals() (chemcoord.Zmat method)
P
partition_chem_env() (chemcoord.Cartesian method)
PhysicalMeaning
PointGroupOperations (class in chemcoord)
R
read_cjson() (chemcoord.Cartesian class method)
read_configuration_file() (in module chemcoord.configuration)
read_molden() (in module chemcoord.xyz_functions)
read_xyz() (chemcoord.Cartesian class method)
read_zmat() (chemcoord.Zmat class method)
reindex_similar() (chemcoord.Cartesian method)
replace() (chemcoord.Cartesian method)
restrict_bond_dict() (chemcoord.Cartesian method)
S
safe_iloc (chemcoord.Zmat attribute)
safe_loc (chemcoord.Zmat attribute)
set_index() (chemcoord.Cartesian method)
shape (chemcoord.Zmat attribute)
sort_index() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
sort_values() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
subs() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
symmetrize() (chemcoord.Cartesian method)
T
TestOperators (class in chemcoord.zmat_functions)
to_cjson() (chemcoord.Cartesian method)
to_latex() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
to_molden() (in module chemcoord.xyz_functions)
to_string() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
to_xyz() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
to_zmat() (chemcoord.Cartesian method)
(chemcoord.Zmat method)
U
UndefinedCoordinateSystem
unsafe_iloc (chemcoord.Zmat attribute)
unsafe_loc (chemcoord.Zmat attribute)
V
view() (chemcoord.Cartesian method)
(in module chemcoord.xyz_functions)
W
write() (chemcoord.Zmat method)
write_configuration_file() (in module chemcoord.configuration)
write_molden() (in module chemcoord.xyz_functions)
write_xyz() (chemcoord.Cartesian method)
Z
Zmat (class in chemcoord)
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