cutsphere

Cartesian.cutsphere(radius=15.0, origin=[0.0, 0.0, 0.0], outside_sliced=True, preserve_bonds=False)[source]

Cuts a sphere specified by origin and radius.

Parameters:
  • radius (float) –
  • origin (list) – Please note that you can also pass an integer. In this case it is interpreted as the index of the atom which is taken as origin.
  • outside_sliced (bool) – Atoms outside/inside the sphere are cut out.
  • preserve_bonds (bool) – Do not cut covalent bonds.
Returns:

Return type:

Cartesian